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CAMTA1::CAMTA1

Known partner

Canonical-transcript structure of the two partner genes, and the read-level evidence supporting the fusion in each tumor sample.

Known studies

No published studies in the Mitelman database describe the CAMTA1::CAMTA1 gene fusion. It may be novel, private to this case, or a technical artifact — absence from a curated database is not by itself evidence either way.

Canonical transcripts in genomic order spliced together in the fusion mRNA 984.3 kb apart chr1 CAMTA1 (+) ENST00000303635 · Ensembl canonical 7,249,626 breakpoint 6,785,454 7,769,706 23 exons · 984.3 kb chr1 CAMTA1 (+) ENST00000303635 · Ensembl canonical 7,370,081 breakpoint 6,785,454 7,769,706 23 exons · 984.3 kb
Canonical transcripts shown in genomic order on chr1 (lower-coordinate gene on the left). Each gene is drawn at its own zoom level. Introns are compressed to 1% of their genomic length so the exons are easier to see — the pixel-space x-axis is therefore non-linear, but the labelled start and end coordinates of each transcript are exact. The gap shown between the two panels (when on the same chromosome) is the actual distance between gene bodies. Transcript IDs are MANE Select where available, else Ensembl_canonical, else the longest protein-coding transcript.

Left hand (primary)

Sub-threshold 1 fragments (1 split, 0 discordant) · CAMTA1 exon 5 → CAMTA1 exon 5

Lung metastasis

Reportable 8 fragments (8 split, 0 discordant) · CAMTA1 exon 5 → CAMTA1 exon 5
All 2 candidate breakpoints in this sample
Breakpoint (up)Breakpoint (down)TypeJunction TotalSplit RealignedDiscordant
chr1:7,249,626 chr1:7,370,081 DEL KNOWN/KNOWN 8 8 0 0
chr1:7,091,371 chr1:7,370,081 DEL KNOWN/KNOWN 2 2 0 0

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