All three RNA samples — the two tumors (hand primary, lung metastasis) and a normal-lung baseline — were reprocessed through the GTEx V11 pipeline (STAR 2.7.11b → RNA-SeQC 2.4.3, collapsed GENCODE v47), so their gene TPMs are directly comparable to GTEx normal-tissue expression. Each scatter plots one sample (x) against GTEx (y) — one point per gene, on a log₂(TPM + 1) scale. Genes far below the diagonal are higher in that sample than in any normal tissue; the driver genes EWSR1 and KLF15 are highlighted in red. The normal lung is an in-patient baseline: it should track GTEx lung, and a gene that is high in a tumor but not in the normal is tumor-specific rather than lung lineage.
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