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CAP1P1::CAP1

High support

Canonical-transcript structure of the two partner genes, and the read-level evidence supporting the fusion in each tumor sample.

Known studies

No published studies in the Mitelman database describe the CAP1P1::CAP1 gene fusion. It may be novel, private to this case, or a technical artifact — absence from a curated database is not by itself evidence either way.

Canonical transcripts in genomic order spliced together in the fusion mRNA chr3 CAP1P1 (+) ENST00000476047 · Ensembl canonical 76,434,752 breakpoint 76,434,018 76,435,428 1 exons · 1.4 kb chr1 CAP1 (+) ENST00000372805 · Ensembl canonical 40,067,662 breakpoint 40,040,729 40,072,648 13 exons · 31.9 kb
Canonical transcripts shown in genomic order — CAP1P1 on chr3, CAP1 on chr1. Each gene is drawn at its own zoom level. Introns are compressed to 1% of their genomic length so the exons are easier to see — the pixel-space x-axis is therefore non-linear, but the labelled start and end coordinates of each transcript are exact. The gap shown between the two panels (when on the same chromosome) is the actual distance between gene bodies. Transcript IDs are MANE Select where available, else Ensembl_canonical, else the longest protein-coding transcript.

Left hand (primary)

Sub-threshold 6 fragments (5 split, 0 discordant) · CAP1P1 exon 1 → CAP1 exon 8

Lung metastasis

Reportable 70 fragments (70 split, 0 discordant) · CAP1P1 exon 1 → CAP1 exon 8

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