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KLC1::KLC1

Known partner

Canonical-transcript structure of the two partner genes, and the read-level evidence supporting the fusion in each tumor sample.

Known studies

No published studies in the Mitelman database describe the KLC1::KLC1 gene fusion. It may be novel, private to this case, or a technical artifact — absence from a curated database is not by itself evidence either way.

Canonical transcripts in genomic order spliced together in the fusion mRNA 72.3 kb apart chr14 KLC1 (+) ENST00000334553 · Ensembl canonical 103,587,364 breakpoint 103,629,211 103,701,544 17 exons · 72.3 kb chr14 KLC1 (+) ENST00000334553 · Ensembl canonical 103,654,564 breakpoint 103,629,211 103,701,544 17 exons · 72.3 kb
Canonical transcripts shown in genomic order on chr14 (lower-coordinate gene on the left). Each gene is drawn at its own zoom level. Introns are compressed to 1% of their genomic length so the exons are easier to see — the pixel-space x-axis is therefore non-linear, but the labelled start and end coordinates of each transcript are exact. The gap shown between the two panels (when on the same chromosome) is the actual distance between gene bodies. Transcript IDs are MANE Select where available, else Ensembl_canonical, else the longest protein-coding transcript.

Left hand (primary)

Reportable 4 fragments (4 split, 0 discordant) · KLC1 exon 2 → KLC1 exon 2
All 3 candidate breakpoints in this sample
Breakpoint (up)Breakpoint (down)TypeJunction TotalSplit RealignedDiscordant
chr14:103,587,364 chr14:103,654,564 DEL KNOWN/KNOWN 4 4 0 0
chr14:103,561,984 chr14:103,571,623 DEL KNOWN/KNOWN 1 1 0 0
chr14:103,574,170 chr14:103,654,564 DEL KNOWN/KNOWN 1 1 0 0

Lung metastasis

Sub-threshold 1 fragments (1 split, 0 discordant) · KLC1 exon 2 → KLC1 exon 2

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