Sebas · MEC

🔬 Sebas — Myoepithelial Carcinoma

Genomics data for Sebas's myoepithelial carcinoma. This site organizes the RNA-seq analysis results so they are easy to browse and share.

Explore the data

Fusions preview

Fusions

Gene fusion calls and read-level evidence per sample.
Expression vs GTEx preview

Expression vs GTEx

Per-gene tumor expression vs GTEx normal tissue and PCAWG tumors — scatters, tissue histograms, and a sortable gene table.
Targets preview

Targets

A hand-curated shortlist of over-expressed genes with a plausible therapeutic or biological handle, plus maps of what makes this tumor distinctive.
Methods & Data preview

Methods & Data

How the data was generated and processed, sequencing QC, and sample provenance.

Tumor samples

Six catalogued specimens. The 2 highlighted rows have RNA-seq reprocessed and shown on this site; others were sequenced elsewhere or are archival.

#AccessionSitePhaseType FusionNGSOn this site
1 SUH-21-014093 Left hand Primary / earliest known specimen FFPE EWSR1::KLF15 WES, RNA-seq, single cell ✓ RNA-seq
2 LPS-22-04880 Lung, right lower lobe Pulmonary metastatic / recurrent lesion FFPE Not yet documented N/A —
3 CF-01500-2 Lung, left lower lobe Pulmonary metastatic / recurrent lesion Cryopreserved EWSR1::KLF15 WES, RNA-seq —
4 SP-22-081918-C Lung, left lower lobe Pulmonary metastatic / recurrent lesion Originally Frozen EWSR1::KLF15 RNA-seq ✓ RNA-seq
5 SP-22-081918-A Lung, right lower lobe Pulmonary metastatic / recurrent lesion FFPE Not yet documented WES, RNA-seq, single cell —
6 SP-22-081918-B Lung, right upper lobe Pulmonary metastatic / recurrent lesion FFPE Not yet documented N/A —

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